Datasets

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The benchmarking datasets are based on 3 datasets from the GAGE project. Here we provide the links to the reference genome, Velvet contigs, and Reference Scaffolding. For downloading the reads, please go to the GAGE website.

Dataset	Reference genome	Velvet contigs	Reference Scaffolding
S. aureus	aureus.ref.fa	aureus.velvet.fa	aureus.scaf
R. sphaeroides	rhodobacter.ref.fa	rhodobacter.velvet.fa	rhodobacter.scaf
H. sapiens (chr 14)	hsapiens.ref.fa	hsapiens.velvet.fa	hsapiens.scaf

Please feel free to download the Reference Scaffolding and experiment with your scaffolding tool of choice. We strongly believe that our framework is a helpful tool for a scaffolding assembly research.